> For the complete documentation index, see [llms.txt](https://docs.abi.am/abi-omicss-guide-2021/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/basic-unix-commands.md).

# Basic Unix Commands

The content of this page is derived from the [Coursera course Command Line Tools for Genomic Data Science offered by Johns Hopkins University](https://www.coursera.org/learn/genomic-tools/home/welcome). Make sure to enroll in the course like you did earlier in the guide.

{% hint style="info" %}
**Note:** From here on it is assumed that you have successfully enrolled in the course and have access to all the materials
{% endhint %}

Now, watch the following videos, and return here afterward:

1. [Basic Unix Commands 10: Archiving Content](https://www.coursera.org/learn/genomic-tools/lecture/pPBJb/basic-unix-commands-10-archiving-content)
2. [Basic Unix Commands 11: Practical Exercises I](https://www.coursera.org/learn/genomic-tools/lecture/2s9ut/basic-unix-commands-11-practical-exercises-i)
3. [Basic Unix Commands 12: Practical Exercises II](https://www.coursera.org/learn/genomic-tools/lecture/VzyF7/basic-unix-commands-12-practical-exercises-ii)

## Congratulations!

If you made it here, then congratulations! You have successfully completed this section. Move to the next portion of the guide with the arrow buttons below.


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/basic-unix-commands.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
