# ABI OMICSS Guide 2021 ## ABI OMICSS Guide 2021 - [Welcome](https://docs.abi.am/abi-omicss-guide-2021/master.md): This guide is created by the Armenian Bioinformatics Institute (ABI) and is the curriculum of the OMICSS summer school. - [Molecular Biology](https://docs.abi.am/abi-omicss-guide-2021/week-1/molecular-biology.md): We begin Week 1 with the basics of molecular biology. This module takes an estimated 5 hours to complete. - [Introduction to Biology](https://docs.abi.am/abi-omicss-guide-2021/week-1/molecular-biology/introduction-to-biology.md): This section takes an estimated 40 minutes to complete. - [Macromolecules](https://docs.abi.am/abi-omicss-guide-2021/week-1/molecular-biology/macromolecules.md): This page takes an estimated 2.5 hours to complete. - [DNA & RNA](https://docs.abi.am/abi-omicss-guide-2021/week-1/molecular-biology/dna-and-rna.md): This page takes an estimated 1.5 hours to complete. - [Cell Division](https://docs.abi.am/abi-omicss-guide-2021/week-1/molecular-biology/cell-division.md): This page takes an estimated 30 minutes to complete - [Command-Line](https://docs.abi.am/abi-omicss-guide-2021/week-1/command-line.md): We continue with an introduction to Command-Line. This module takes an estimated 2 hours to complete. - [Connecting to the Server](https://docs.abi.am/abi-omicss-guide-2021/week-1/command-line/connecting-to-the-server.md): This page takes an estimated 15 minutes to complete. - [The Linux Command-Line For Beginners](https://docs.abi.am/abi-omicss-guide-2021/week-1/command-line/the-linux-command-line-for-beginners.md): This page takes an estimated 1 hour to complete. - [The Bash Terminal](https://docs.abi.am/abi-omicss-guide-2021/week-1/command-line/the-bash-terminal.md): This page takes an estimated 1 hour to complete. - [R Programming](https://docs.abi.am/abi-omicss-guide-2021/week-1/r-programming.md): We conclude Week 1 with introduction to R Programming. This module takes an estimated 1.5 hours to complete. - [Getting Started](https://docs.abi.am/abi-omicss-guide-2021/week-1/r-programming/getting-started.md): This page takes an estimated 40 minutes to complete. - [The Basics](https://docs.abi.am/abi-omicss-guide-2021/week-1/r-programming/the-basics.md): This page takes an estimated 45 minutes to complete. - [Data Types](https://docs.abi.am/abi-omicss-guide-2021/week-1/r-programming/data-types.md): This page takes an estimated 25 minutes to complete. - [Week 1 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-1/week-1-exam.md): Complete this exam after you finish Week 1 course material. - [Molecular Biology](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology.md): We begin Week 2 with molecular biology and pick up where we left off. This module takes an estimated 3 hours to complete. - [DNA Proofreading And Repair](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/dna-proofreading-and-repair.md): This page takes an estimated 20 minutes to complete. - [Telomeres and Telomerase](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/telomeres-and-telomerase.md): This page takes an estimated 15 minutes to complete. - [Genes](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/genes.md): This page takes an estimated 45 minutes to complete. - [The One Gene, One Enzyme Hypothesis](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/the-one-gene-one-enzyme-hypothesis.md): This page takes an estimated 15 minutes to complete. - [Transcription](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/untitled.md): This page takes an estimated 1 hour to complete - [Translation](https://docs.abi.am/abi-omicss-guide-2021/week-2/molecular-biology/translation.md): This page takes an estimated 30 minutes to complete. - [R Programming](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming.md): We pick up where we left off in week 2 of R Programming. This module takes an estimated 4 hours to complete. - [Data Types (continuation)](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/data-types-continuation.md): This page takes an estimated 45 minutes to complete. - [Reading Data](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/reading-data.md): This page takes an estimated 20 minutes to complete. - [Subsetting](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/subsetting.md): This page takes an estimated 35 minutes to complete. - [Control Structures](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/control-structures.md): This page takes an estimated 30 minutes to complete. - [Functions](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/functions.md): This section takes an estimated 45 minutes to complete. - [Scoping Rules](https://docs.abi.am/abi-omicss-guide-2021/week-2/r-programming/scoping-rules.md): This page takes an estimated 1 hour to complete. - [Week 2 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-2/week-2-exam.md): Complete this exam after you finish Week 2 course material. - [Molecular Biology](https://docs.abi.am/abi-omicss-guide-2021/week-3/molecular-biology.md): We begin week 3 with molecular biology and pick up where we left off. This module takes an estimated 3 hours to complete. - [tRNA and Ribosomes](https://docs.abi.am/abi-omicss-guide-2021/week-3/molecular-biology/trna-and-ribosomes.md): This page takes an estimated 15 minutes to complete. - [Stages of Translation & Protein Targeting](https://docs.abi.am/abi-omicss-guide-2021/week-3/molecular-biology/stages-of-translation-and-protein-targeting.md): This page takes an estimated 15 minutes to complete. - [Heredity](https://docs.abi.am/abi-omicss-guide-2021/week-3/molecular-biology/heredity.md): This page takes an estimated 1.5 hours to complete. - [Probabilities In Genetics](https://docs.abi.am/abi-omicss-guide-2021/week-3/molecular-biology/probabilities-in-genetics.md): This page takes an estimated 45 minutes to complete. - [R Programming](https://docs.abi.am/abi-omicss-guide-2021/week-3/r-programming.md): We continue exploring the possibilities of R in Week 3. This module takes an estimated 2.5 hours to complete. - [Loop Functions](https://docs.abi.am/abi-omicss-guide-2021/week-3/r-programming/loop-functions.md): This page takes an estimated 1 hour to complete. - [Base Graphics](https://docs.abi.am/abi-omicss-guide-2021/week-3/r-programming/base-graphics.md): This page takes an estimated 30 minutes to complete. - [Statistics and R](https://docs.abi.am/abi-omicss-guide-2021/week-3/statistics-and-r.md): Lastly, we begin studying Statistics and R. This module takes an estimated 1 hour to complete. - [The Basics](https://docs.abi.am/abi-omicss-guide-2021/week-3/statistics-and-r/the-basics.md): This page takes an estimated 1 hour to complete. - [Week 3 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-3/week-3-exam.md): Complete this exam after you finish Week 3 course material. - [Molecular Biology](https://docs.abi.am/abi-omicss-guide-2021/week-4/untitled.md): This is the final week of studying molecular biology. This module takes an estimated 1.5 hours to complete. - [Interesting Cases of Genes](https://docs.abi.am/abi-omicss-guide-2021/week-4/untitled/interesting-cases-of-genes.md): This page takes an estimated 35 minutes to complete - [The Chromosomal Basis of Inheritance](https://docs.abi.am/abi-omicss-guide-2021/week-4/untitled/the-chromosomal-basis-of-inheritance.md): This page takes an estimated 30 minutes to complete - [Variation in Species](https://docs.abi.am/abi-omicss-guide-2021/week-4/untitled/variation-in-species.md): This page takes an estimated 20 minutes to complete. - [Phenotype plasticity](https://docs.abi.am/abi-omicss-guide-2021/week-4/untitled/phenotype-plasticity.md): This page takes an estimated 5 minutes to complete. - [R Programming](https://docs.abi.am/abi-omicss-guide-2021/week-4/r-programming.md): In the final week of learning R Programming, we focus on practice exercises. This module takes an estimated 40 minutes to complete. - [Practice 2](https://docs.abi.am/abi-omicss-guide-2021/week-4/r-programming/practice-2.md): This page takes an estimated 20 minutes to complete. - [Practice 3](https://docs.abi.am/abi-omicss-guide-2021/week-4/r-programming/practice-3.md): This page takes an estimated 20 minutes to complete. - [Statistics and R](https://docs.abi.am/abi-omicss-guide-2021/week-4/statistics-and-r.md): This module takes an estimated 3 hours to complete. - [Random Variables and Probability Distributions](https://docs.abi.am/abi-omicss-guide-2021/week-4/statistics-and-r/random-variables-and-probability-distributions.md): This page takes an estimated 55 minutes to complete. - [Central Limit Theorem](https://docs.abi.am/abi-omicss-guide-2021/week-4/statistics-and-r/central-limit-theorem.md): This page takes an estimated 2 hours to complete - [Week 4 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-4/week-4-exam.md): Complete this exam after you finish Week 4 course material. - [Statistics and R](https://docs.abi.am/abi-omicss-guide-2021/week-5/untitled.md): We pick up where we left off in week 5 of statistics. This module takes an estimated 2.5 hours to complete. - [Confidence Interval](https://docs.abi.am/abi-omicss-guide-2021/week-5/untitled/confidence-interval.md): This page takes an estimated 45 minutes to complete. - [Introduction to Inference](https://docs.abi.am/abi-omicss-guide-2021/week-5/untitled/introduction-to-inference.md): This page takes an estimated 1 hour to complete. - [t-distribution and Comparing Means](https://docs.abi.am/abi-omicss-guide-2021/week-5/untitled/t-distribution-and-comparing-means.md): This page takes an estimated 20 minutes to complete. - [Linear Models](https://docs.abi.am/abi-omicss-guide-2021/week-5/untitled/linear-models.md): This page takes an estimated 15 minutes to complete. - [Experimental Techniques](https://docs.abi.am/abi-omicss-guide-2021/week-5/experimental-techniques.md): This module takes an estimated 1.5 hours to complete. - [Polymerase Chain Reaction (PCR)](https://docs.abi.am/abi-omicss-guide-2021/week-5/experimental-techniques/polymerase-chain-reaction-pcr.md): This page takes an estimated 35 minutes to complete. - [Gel Electrophoresis](https://docs.abi.am/abi-omicss-guide-2021/week-5/experimental-techniques/gel-electrophoresis.md): This page takes an estimated 40 minutes to complete. - [Sanger Sequencing](https://docs.abi.am/abi-omicss-guide-2021/week-5/experimental-techniques/sanger-sequencing.md): This page takes an estimated 20 minutes to complete. - [NGS Sequencing](https://docs.abi.am/abi-omicss-guide-2021/week-5/experimental-techniques/ngs-sequencing.md): This page takes an estimated 30 minutes to complete. - [Week 5 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-5/week-5-exam.md): Complete this exam after you finish Week 5 course material. - [Statistics and R](https://docs.abi.am/abi-omicss-guide-2021/week-6/untitled.md): We pick up where we left off in week 6 of statistics. This module takes an estimated 2 hours to complete. - [Power](https://docs.abi.am/abi-omicss-guide-2021/week-6/untitled/power.md): This page takes an estimated 25 minutes to complete. - [ANOVA](https://docs.abi.am/abi-omicss-guide-2021/week-6/untitled/anova.md): This page takes an estimated 20 minutes to complete. - [Covariance and Correlation](https://docs.abi.am/abi-omicss-guide-2021/week-6/untitled/covariance-and-correlation.md): This page takes an estimated 1 hour to complete. - [NGS](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs.md): This module takes an estimated 3 hours to complete. - [Basic Unix Commands](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/basic-unix-commands.md): This page takes an estimated 40 minutes to complete. - [Sequences and Genomic Features](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/sequences-and-genomic-features.md): This page takes an estimated 1 hour to complete. - [FastQC](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/fastqc.md): This page takes an estimated 1 hour to complete. - [Practice Exercises](https://docs.abi.am/abi-omicss-guide-2021/week-6/ngs/practice-exercises.md): This page takes an estimated 15 minutes to complete. - [Week 6 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-6/week-6-exam.md): Complete this exam after you finish Week 6 course material. - [Statistics and R](https://docs.abi.am/abi-omicss-guide-2021/week-7/untitled.md): This is the final week of statistics. This module takes an estimated 2 hours to complete. - [Monte Carlo Simulation](https://docs.abi.am/abi-omicss-guide-2021/week-7/untitled/monte-carlo-simulation.md): This page takes an estimated 45 minutes to complete. - [Exploratory Data Analysis](https://docs.abi.am/abi-omicss-guide-2021/week-7/untitled/exploratory-data-analysis.md): This page takes an estimated 45 minutes to complete. - [Linear Regression](https://docs.abi.am/abi-omicss-guide-2021/week-7/untitled/linear-regression.md): This page takes an estimated 40 minutes to complete. - [NGS](https://docs.abi.am/abi-omicss-guide-2021/week-7/ngs.md): This module takes an estimated 2 hours to complete. - [BEDtools](https://docs.abi.am/abi-omicss-guide-2021/week-7/ngs/bedtools.md): This page takes an estimated 1 hour to complete. - [Alignment and Sequence Variation](https://docs.abi.am/abi-omicss-guide-2021/week-7/ngs/alignment-and-sequence-variation.md): This page takes an estimated 35 minutes to complete. - [Integrated Genomics Viewer](https://docs.abi.am/abi-omicss-guide-2021/week-7/ngs/integrated-genomics-viewer.md): This page takes an estimated 15 minutes to complete. - [Week 7 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-7/week-7-exam.md): Complete this exam after you finish Week 7 course material. - [NGS](https://docs.abi.am/abi-omicss-guide-2021/week-8/untitled.md): In the final week of the guide, we focus on NGS. This module takes an estimated 1 hour to complete. - [Variant Calling With GATK](https://docs.abi.am/abi-omicss-guide-2021/week-8/untitled/variant-calling-with-gatk.md): This page takes an estimated 45 minutes to complete. - [Practice 1](https://docs.abi.am/abi-omicss-guide-2021/week-8/untitled/practice-1.md): This page takes an estimated 15 minutes to complete. - [Week 8 Exam](https://docs.abi.am/abi-omicss-guide-2021/week-8/week-8-exam.md): Complete this exam after you finish Week 8 course material. - [Module Syllabi](https://docs.abi.am/abi-omicss-guide-2021/syllabi.md): Here you can download the syllabi for all the modules in the guide. - [Additional Resources](https://docs.abi.am/abi-omicss-guide-2021/additional-resources.md): Here you can find additional materials to deeper explore data science. - [Conclusion](https://docs.abi.am/abi-omicss-guide-2021/conclusion.md): Congratulations! You have successfully completed the ABI OMICSS 2021 Guide.